ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ze2C3 - ECOD Domain | ECOD

ECOD/Domains/e5ze2C3

e5ze2C3

UID: 002327726

PDB

Range: C:792-957
PDB: 5ZE2 chain C(all domains)
UniProt: P15919 (all domains)
Gene: Rag1

Molecule: mouse RAG1

3D Structure

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Related Domains

Browse other domains in RAG1_ZnH2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupV(D)J recombination-activating protein 1 helical bundle domain(3948)

HH-groupV(D)J recombination-activating protein 1 helical bundle domain(3948.1)

TT-groupV(D)J recombination-activating protein 1 helical bundle domain(3948.1.1)

FFamilyRAG1_ZnH2(3948.1.1.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal
MANGANESE (II) IONMN
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF26104RAG1_ZnH2

Recombination-activation protein 1 (RAG1) ZnH2 domain

External Links

ECOD PDB View: 5ZE2 RCSB PDB: 5ZE2 PDBe: 5ZE2 UniProt: P15919

Downloads

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1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.