ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yq7B1 - ECOD Domain | ECOD

ECOD/Domains/e5yq7B1

e5yq7B1

UID: 002328947

PDB

Range: B:11-54
PDB: 5YQ7 chain B(all domains)
UniProt: Q83XD2 (all domains)
Gene: pufB

Molecule: Beta subunit of light-harvesting 1

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
beta,psi-caroten-4-oneKGD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 5YQ7 RCSB PDB: 5YQ7 PDBe: 5YQ7 UniProt: Q83XD2

Downloads

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