ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yu1B2 - ECOD Domain | ECOD

ECOD/Domains/e5yu1B2

e5yu1B2

UID: 002328985

PDB

Range: B:122-303
PDB: 5YU1 chain B(all domains)
UniProt: D9UBW0 (all domains)
Gene: pipA

Molecule: Lysine cyclodeaminase

3D Structure

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Related Domains

Browse other domains in OCD_Mu_crystall →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyOCD_Mu_crystall(2003.1.1.29)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Sodium ionNA
metal
(2S)-piperidine-2-carboxylic acidYCP

Pfam Families

PF02423OCD_Mu_crystall

Ornithine cyclodeaminase/mu-crystallin family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YU1 RCSB PDB: 5YU1 PDBe: 5YU1 UniProt: D9UBW0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.