ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yu3A2 - ECOD Domain | ECOD

ECOD/Domains/e5yu3A2

e5yu3A2

UID: 002328991

PDB

Range: A:1-121,A:304-344
PDB: 5YU3 chain A(all domains)
UniProt: D9UBW0 (all domains)
Gene: pipA

Molecule: Lysine cyclodeaminase

3D Structure

Loading viewer...

Related Domains

Browse other domains in OCD_Mu_crystall →

Classification

AArchitecturea+b two layers(a.11)

XX-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692)

HH-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692.1)

TT-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692.1.1)

FFamilyOCD_Mu_crystall(3692.1.1.1)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
ProlinePRO
drugDrugBank DB00172

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02423OCD_Mu_crystall

Ornithine cyclodeaminase/mu-crystallin family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YU3 RCSB PDB: 5YU3 PDBe: 5YU3 UniProt: D9UBW0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure