ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yu4D2 - ECOD Domain | ECOD

ECOD/Domains/e5yu4D2

e5yu4D2

UID: 002329005

PDB

Range: D:1-121,D:304-344
PDB: 5YU4 chain D(all domains)
UniProt: D9UBW0 (all domains)
Gene: pipA

Molecule: Lysine cyclodeaminase

3D Structure

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Related Domains

Browse other domains in OCD_Mu_crystall →

Classification

AArchitecturea+b two layers(a.11)

XX-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692)

HH-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692.1)

TT-groupOrnithine cyclodeaminase-like enzymes dimerization domain(3692.1.1)

FFamilyOCD_Mu_crystall(3692.1.1.1)

Ligands

in contact, ≤ 4 Å

L-2,4-diaminobutyric acidDAB
drugDrugBank DB03817
NadideNAD
drugDrugBank DB14128

Shown in the structure viewer.

Pfam Families

PF02423OCD_Mu_crystall

Ornithine cyclodeaminase/mu-crystallin family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YU4 RCSB PDB: 5YU4 PDBe: 5YU4 UniProt: D9UBW0

Downloads

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Drug annotations from DrugDomain.