ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cpbB1 - ECOD Domain | ECOD

ECOD/Domains/e6cpbB1

e6cpbB1

UID: 002329742

PDB

Range: B:8-142
PDB: 6CPB chain B(all domains)
UniProt: Q3AB29 (all domains)
Gene: cooA-1

Molecule: Carbon monoxide oxidation system transcription regulator CooA-1

3D Structure

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Related Domains

Browse other domains in cNMP_binding →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilycNMP_binding(10.12.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00027cNMP_binding

Cyclic nucleotide-binding domain

ClanCL0029Cupin

External Links

ECOD PDB View: 6CPB RCSB PDB: 6CPB PDBe: 6CPB UniProt: Q3AB29

Downloads

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