ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nfjB1 - ECOD Domain | ECOD

ECOD/Domains/e5nfjB1

e5nfjB1

UID: 002329936

PDB

Range: B:202-378
PDB: 5NFJ chain B(all domains)
UniProt: Q7L0Y3 (all domains)
Gene: TRMT10C

Molecule: Mitochondrial ribonuclease P protein 1

3D Structure

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Related Domains

Browse other domains in TRM10_TRM10A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTRM10_TRM10A(2488.1.1.19)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF27710TRM10_TRM10A

tRNA (guanine(9)-N(1))-methyltransferase TRM10/TRM10A

ClanCL0098SPOUT

External Links

ECOD PDB View: 5NFJ RCSB PDB: 5NFJ PDBe: 5NFJ UniProt: Q7L0Y3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.