ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o4vC1 - ECOD Domain | ECOD

ECOD/Domains/e5o4vC1

e5o4vC1

UID: 002330046

PDB

Range: C:27-210
PDB: 5O4V chain C(all domains)
UniProt: A5K1A2 (all domains)
Gene: PVX_085815

Molecule: Glycylpeptide N-tetradecanoyltransferase

3D Structure

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Related Domains

Browse other domains in NMT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNat/Ivy(213)

HH-groupAcyl-CoA N-acyltransferases (Nat)(213.1)

TT-groupAcyl-CoA N-acyltransferases (Nat)(213.1.1)

FFamilyNMT(213.1.1.4)

Ligands

in contact, ≤ 4 Å

1-[5-(4-fluoranyl-2-methyl-phenyl)-1~{H}-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine9K2
ethyl 2,4-dimethylquinoline-3-carboxylate9KZ
Chloride ionCL

Pfam Families

Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

ClanCL0257Acetyltrans

External Links

ECOD PDB View: 5O4V RCSB PDB: 5O4V PDBe: 5O4V UniProt: A5K1A2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

2-oxopentadecyl-CoANHW

+ 2 additives (Dimethyl sulfoxide, Sulfate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.