ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5wm3A2 - ECOD Domain | ECOD

ECOD/Domains/e5wm3A2

e5wm3A2

UID: 002330284

PDB

Range: A:450-555
PDB: 5WM3 chain A(all domains)
UniProt: A0A140DJY3 (all domains)
Gene: cahJ

Molecule: Salicylate-AMP ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5)

TT-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5.1)

FFamilyAMP-binding_C(327.5.1.2)

Ligands

in contact, ≤ 4 Å

9-(5-O-{(S)-hydroxy[(2-hydroxybenzene-1-carbonyl)oxy]phosphoryl}-alpha-L-lyxofuranosyl)-9H-purin-6-amineB5V

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13193AMP-binding_C

AMP-binding enzyme C-terminal domain

ClanCL0531AMP-binding_C

External Links

ECOD PDB View: 5WM3 RCSB PDB: 5WM3 PDBe: 5WM3 UniProt: A0A140DJY3

Downloads

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