ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yipA1 - ECOD Domain | ECOD

ECOD/Domains/e5yipA1

e5yipA1

UID: 002330304

PDB

Range: A:-5-117
PDB: 5YIP chain A(all domains)
UniProt: Q8R3R8 (all domains)
Gene: Gabarapl1

Molecule: Gamma-aminobutyric acid receptor-associated protein-like 1

3D Structure

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Related Domains

Browse other domains in ATG8 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyATG8(221.1.1.18)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Autophagy protein Atg8 ubiquitin like

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5YIP RCSB PDB: 5YIP PDBe: 5YIP UniProt: Q8R3R8

Downloads

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