ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b55B1 - ECOD Domain | ECOD

ECOD/Domains/e6b55B1

e6b55B1

UID: 002331207

PDB

Range: B:0-47
PDB: 6B55 chain B(all domains)
UniProt: Q8GTM0 (all domains)
Gene: D1

Molecule: Flower-specific defensin

3D Structure

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Related Domains

Browse other domains in Gamma-thionin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupomega toxin-like(387)

HH-groupomega toxin-related(387.1)

TT-groupScorpion toxin-like(387.1.5)

FFamilyGamma-thionin(387.1.5.1)

Ligands

in contact, ≤ 4 Å

1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATEPA8

+ 2 additives (Triethylene glycol, Phosphate ion)

Triethylene glycolPGE
DrugBank DB02327
Phosphate ionPO4

Pfam Families

PF00304Gamma-thionin

Gamma-thionin family

ClanCL0054Knottin_1

External Links

ECOD PDB View: 6B55 RCSB PDB: 6B55 PDBe: 6B55 UniProt: Q8GTM0

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.