ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xleS1 - ECOD Domain | ECOD

ECOD/Domains/e5xleS1

e5xleS1

UID: 002336686

PDB

Range: S:4-183
PDB: 5XLE chain S(all domains)
UniProt: P21853 (all domains)
Gene: hydA

Molecule: Periplasmic [NiFe] hydrogenase small subunit

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Tromethamine)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
TromethamineTRS

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 5XLE RCSB PDB: 5XLE PDBe: 5XLE UniProt: P21853

Downloads

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DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.