ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yg3B2 - ECOD Domain | ECOD

ECOD/Domains/e5yg3B2

e5yg3B2

UID: 002336902

PDB

Range: B:291-442
PDB: 5YG3 chain B(all domains)
UniProt: A0A1G4H5I1 (all domains)
Gene: PVC01_140059500

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

N-Pyridoxyl-Glycine-5-MonophosphatePLG
drugDrugBank DB02824
(3~{S})-6'-azanyl-7-fluoranyl-2,2,3'-trimethyl-5-pyridin-4-yl-spiro[1~{H}-indene-3,4'-2~{H}-pyrano[2,3-c]pyrazole]-5'-carbonitrile8UC

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5YG3 RCSB PDB: 5YG3 PDBe: 5YG3 UniProt: A0A1G4H5I1

Downloads

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Drug annotations from DrugDomain.