ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yguA1 - ECOD Domain | ECOD

ECOD/Domains/e5yguA1

e5yguA1

UID: 002336911

PDB

Range: A:1-130
PDB: 5YGU chain A(all domains)
UniProt: P0A6K1 (all domains)
Gene: dapF

Molecule: Diaminopimelate epimerase

3D Structure

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Related Domains

Browse other domains in DAP_epimerase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupDiaminopimelate epimerase-like(286)

HH-groupDiaminopimelate epimerase-like(286.1)

TT-groupDiaminopimelate epimerase-like(286.1.1)

FFamilyDAP_epimerase(286.1.1.1)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459
Iodide ionIOD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01678DAP_epimerase

Diaminopimelate epimerase

ClanCL0288DAP_epimerase

External Links

ECOD PDB View: 5YGU RCSB PDB: 5YGU PDBe: 5YGU UniProt: P0A6K1

Downloads

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