ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2byoA1 - ECOD Domain | ECOD

ECOD/Domains/e2byoA1

e2byoA1

UID: 000002361

RepresentativePDB

Range: A:20-207
PDB: 2BYO chain A(all domains)
UniProt: P9WK65 (all domains)
Gene: lppX

Molecule: LIPOPROTEIN LPPX

3D Structure

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Related Domains

Browse other domains in LppX_LprAFG →

Classification

AArchitecturebeta meanders(a.2)

XX-groupLipoprotein localization factors LolAB(71)

HH-groupLipoprotein localization factors LolAB(71.1)

TT-groupLipoprotein localization factors LolAB(71.1.1)

FFamilyLppX_LprAFG(71.1.1.6)

Ligands

in contact, ≤ 4 Å

DoconexentHXA
drugDrugBank DB03756
alpha-Linolenic acidLNL
drugDrugBank DB00132

Pfam Families

PF07161LppX_LprAFG

LppX_LprAFG lipoprotein

ClanCL0048LolA_LolB

External Links

ECOD PDB View: 2BYO RCSB PDB: 2BYO PDBe: 2BYO UniProt: P9WK65

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Oxaloacetate Ion

drugDrugBank DB02637

Zinc ionZN

metal

+ 2 additives (Acetate, D-Malic acid)

AcetateACT
DrugBank DB14511
D-Malic acidMLT
DrugBank DB03499

Shown in the structure viewer. Drug annotations from DrugDomain.