ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cgpA1 - ECOD Domain | ECOD

ECOD/Domains/e6cgpA1

e6cgpA1

UID: 002388299

PDB

Range: A:442-798
PDB: 6CGP chain A(all domains)
UniProt: A7YT55 (all domains)
Gene: hdac6

Molecule: Hdac6 protein

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

N-hydroxy-4-[(2-propylimidazo[1,2-a]pyridin-3-yl)amino]benzamideF1Y
Potassium ionK
metal
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 6CGP RCSB PDB: 6CGP PDBe: 6CGP UniProt: A7YT55

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.