ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oc0A1 - ECOD Domain | ECOD

ECOD/Domains/e5oc0A1

e5oc0A1

UID: 002388407

PDB

Range: A:2-175
PDB: 5OC0 chain A(all domains)
UniProt: P0ABE5 (all domains)
Gene: cybB

Molecule: Cytochrome b561

3D Structure

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Related Domains

Browse other domains in Ni_hydr_CYTB →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyNi_hydr_CYTB(5069.1.1.2)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Octyl Glucose Neopentyl Glycol37X
Magnesium ionMG

Pfam Families

PF01292Ni_hydr_CYTB

Prokaryotic cytochrome b561

ClanCL03282heme_cytochrom

External Links

ECOD PDB View: 5OC0 RCSB PDB: 5OC0 PDBe: 5OC0 UniProt: P0ABE5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.