ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ndxA2 - ECOD Domain | ECOD

ECOD/Domains/e5ndxA2

e5ndxA2

UID: 002389347

PDB

Range: A:1-333,A:353-377
PDB: 5NDX chain A(all domains)
UniProt: A0A1B8R7L2 (all domains)

Molecule: Glycosyl hydrolase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_39 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_39(2002.1.1.58)

Ligands

in contact, ≤ 4 Å

(2~{R},3~{S},4~{S},5~{R},6~{S})-6-(4-methyl-2-oxidanylidene-chromen-7-yl)oxy-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid8U8

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01229Glyco_hydro_39

Glycosyl hydrolases family 39

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5NDX RCSB PDB: 5NDX PDBe: 5NDX UniProt: A0A1B8R7L2

Downloads

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