ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6g2lA1 - ECOD Domain | ECOD

ECOD/Domains/e6g2lA1

e6g2lA1

UID: 002389496

PDB

Range: A:27-29,A:32-227
PDB: 6G2L chain A(all domains)
UniProt: Q9NPB1 (all domains)
Gene: NT5M

Molecule: 5'(3')-deoxyribonucleotidase, mitochondrial

3D Structure

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Related Domains

Browse other domains in NT5C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyNT5C(2006.1.1.10)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
[(2~{R},4~{a}~{R},6~{R},7~{a}~{R})-6-[2,4-bis(oxidanylidene)-5-(phosphonomethylsulfanylmethyl)pyrimidin-1-yl]-2-phenyl-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acidEJ8

Pfam Families

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

ClanCL0137HAD

External Links

ECOD PDB View: 6G2L RCSB PDB: 6G2L PDBe: 6G2L UniProt: Q9NPB1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.