ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gvpA1 - ECOD Domain | ECOD

ECOD/Domains/e6gvpA1

e6gvpA1

UID: 002389603

PDB

Range: A:629-709
PDB: 6GVP chain A(all domains)
UniProt: Q9AYY6 (all domains)
Gene: 9

Molecule: Tail spike protein

3D Structure

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Related Domains

Browse other domains in HK620_9_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyHK620_9_C(1.1.7.52)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Formic acid, Tromethamine)

Formic acidFMT
DrugBank DB01942
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22424HK620_9_C

HK620, Tail spike protein, C-terminal

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 6GVP RCSB PDB: 6GVP PDBe: 6GVP UniProt: Q9AYY6

Downloads

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