ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dusA1 - ECOD Domain | ECOD

ECOD/Domains/e6dusA1

e6dusA1

UID: 002389806

PDB

Range: A:26-335
PDB: 6DUS chain A(all domains)
UniProt: A0A0H3NMP8 (all domains)
Gene: G1W50_07705

Molecule: Type III secretion system effector protein

3D Structure

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Related Domains

Browse other domains in SseK_NleB →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilySseK_NleB(7516.1.1.90)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Uridine-5'-DiphosphateUDP
drugDrugBank DB03435

Pfam Families

PF24688SseK_NleB

SseK/NleB family

ClanCL0110GT-A

External Links

ECOD PDB View: 6DUS RCSB PDB: 6DUS PDBe: 6DUS UniProt: A0A0H3NMP8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ion

metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Tromethamine)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.