ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y4nL1 - ECOD Domain | ECOD

ECOD/Domains/e5y4nL1

e5y4nL1

UID: 002390449

PDB

Range: L:102-329,L:381-461
PDB: 5Y4N chain L(all domains)
UniProt: P21852 (all domains)
Gene: hydB

Molecule: Periplasmic [NiFe] hydrogenase large subunit

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyNiFeSe_Hases(4025.1.1.2)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
(4R)-2-METHYLPENTANE-2,4-DIOLMRD
Iron/sulfur clusterSF4
formyl[bis(hydrocyanato-1kappaC)]ironnickel(Fe-Ni)NFU

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5Y4N RCSB PDB: 5Y4N PDBe: 5Y4N UniProt: P21852

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.