ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5z84B1 - ECOD Domain | ECOD

ECOD/Domains/e5z84B1

e5z84B1

UID: 002390791

PDB

Range: B:1-90
PDB: 5Z84 chain B(all domains)
UniProt: P68530 (all domains)
Gene: MT-CO2

Molecule: Cytochrome c oxidase subunit 2

3D Structure

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Related Domains

Browse other domains in COX2_TM →

Classification

AArchitectureextended segments(a.20)

XX-groupCytochrome c oxidase subunit II-like, transmembrane region(5040)

HH-groupCytochrome c oxidase subunit II-like, transmembrane region(5040.1)

TT-groupCytochrome c oxidase subunit II-like, transmembrane region(5040.1.1)

FFamilyCOX2_TM(5040.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
Cholic AcidCHD
drugDrugBank DB02659
Heme-a

Pfam Families

PF02790COX2_TM

Cytochrome C oxidase subunit II, transmembrane domain

External Links

ECOD PDB View: 5Z84 RCSB PDB: 5Z84 PDBe: 5Z84 UniProt: P68530

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEPSC

TristearoylglycerolTGL

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK

within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.