ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yszA3 - ECOD Domain | ECOD

ECOD/Domains/e5yszA3

e5yszA3

UID: 002391036

PDB

Range: A:170-340
PDB: 5YSZ chain A(all domains)
UniProt: Q47RE1 (all domains)
Gene: Tfu_0938

Molecule: Transcriptional regulator, LacI family

3D Structure

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Related Domains

Browse other domains in Peripla_BP_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_3(2007.1.2.10)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13377Peripla_BP_3

Periplasmic binding protein-like domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 5YSZ RCSB PDB: 5YSZ PDBe: 5YSZ UniProt: Q47RE1

Downloads

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