ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5opdB3 - ECOD Domain | ECOD

ECOD/Domains/e5opdB3

e5opdB3

UID: 002391498

PDB

Range: B:7-203
PDB: 5OPD chain B(all domains)
UniProt: A8A5E6 (all domains)
Gene: tuf1

Molecule: Elongation factor Tu 1

3D Structure

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Related Domains

Browse other domains in GTP_EFTU →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyGTP_EFTU(2004.1.1.14)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Iodide ionIOD
Magnesium ionMG

Pfam Families

PF00009GTP_EFTU

Elongation factor Tu GTP binding domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5OPD RCSB PDB: 5OPD PDBe: 5OPD UniProt: A8A5E6

Downloads

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metal

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.