ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xxdA2 - ECOD Domain | ECOD

ECOD/Domains/e5xxdA2

e5xxdA2

UID: 002391519

PDB

Range: A:3-267
PDB: 5XXD chain A(all domains)
UniProt: Q9H7B4 (all domains)
Gene: SMYD3

Molecule: Smyd3 methyltransferase

3D Structure

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Related Domains

Browse other domains in SET, zf-MYND →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET, zf-MYND(70.3.1.11)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
ethyl 4-(5,6,7,8-tetrahydroacridin-3-ylcarbonyl)piperazine-1-carboxylate8NR
Zinc ionZN

Pfam Families

SET domain

ClanCL0489SAF

PF01753zf-MYND

MYND finger

ClanCL0175TRASH

External Links

ECOD PDB View: 5XXD RCSB PDB: 5XXD PDBe: 5XXD UniProt: Q9H7B4

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.