ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yntB1 - ECOD Domain | ECOD

ECOD/Domains/e5yntB1

e5yntB1

UID: 002391532

PDB

Range: B:-5-308
PDB: 5YNT chain B(all domains)
UniProt: V5TDY7 (all domains)
Gene: ambP3

Molecule: aromatic prenyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in PTase_Orf2 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPrenyltransferase-like(4194)

HH-groupPrenyltransferase-like(4194.1)

TT-groupPrenyltransferase-like(4194.1.1)

FFamilyPTase_Orf2(4194.1.1.1)

Ligands

in contact, ≤ 4 Å

Dimethylallyl DiphosphateDMA
drugDrugBank DB01785

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer.

Pfam Families

PF11468PTase_Orf2

Aromatic prenyltransferase Orf2

External Links

ECOD PDB View: 5YNT RCSB PDB: 5YNT PDBe: 5YNT UniProt: V5TDY7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.