ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6h8tA1 - ECOD Domain | ECOD

ECOD/Domains/e6h8tA1

e6h8tA1

UID: 002392390

PDB

Range: A:1-212
PDB: 6H8T chain A(all domains)
UniProt: P00784 (all domains)

Molecule: Papain

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
chloro(1-{5-[di(pyridin-2-yl-kappaN)amino]pentyl}pyrrolidine-2,5-dione)rutheniumYXX
chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]rutheniumYXZ

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6H8T RCSB PDB: 6H8T PDBe: 6H8T UniProt: P00784

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.