ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yscA2 - ECOD Domain | ECOD

ECOD/Domains/e5yscA2

e5yscA2

UID: 002392428

PDB

Range: A:22-142
PDB: 5YSC chain A(all domains)
UniProt: A5F5P5 (all domains)
Gene: btuF

Molecule: Vitamin B12-binding protein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyPeripla_BP_2(2007.1.14.5)

Ligands

in contact, ≤ 4 Å

CyanocobalaminCNC
drugDrugBank DB00115

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF01497Peripla_BP_2

Periplasmic binding protein

ClanCL0043Chelatase

External Links

ECOD PDB View: 5YSC RCSB PDB: 5YSC PDBe: 5YSC UniProt: A5F5P5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.