ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5z56A3 - ECOD Domain | ECOD

ECOD/Domains/e5z56A3

e5z56A3

UID: 002392438

PDB

Range: A:25-810
PDB: 5Z56 chain A(all domains)
UniProt: Q6P2Q9 (all domains)
Gene: PRPF8

Molecule: Pre-mRNA-processing-splicing factor 8

3D Structure

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Related Domains

Browse other domains in PRO8NT,PROCN →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPre-mRNA-splicing factor 8 N-terminal domain(1038)

HH-groupPre-mRNA-splicing factor 8 N-terminal domain(1038.1)

TT-groupPre-mRNA-splicing factor 8 N-terminal domain(1038.1.1)

FFamilyPRO8NT,PROCN(1038.1.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Phytic acidIHP
drugDrugBank DB14981within 5 Å only

Pfam Families

PRO8NT (NUC069), PrP8 N-terminal domain

PROCN (NUC071) domain

External Links

ECOD PDB View: 5Z56 RCSB PDB: 5Z56 PDBe: 5Z56 UniProt: Q6P2Q9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.