ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ybyA1 - ECOD Domain | ECOD

ECOD/Domains/e5ybyA1

e5ybyA1

UID: 002393051

PDB

Range: A:177-421
PDB: 5YBY chain A(all domains)
UniProt: Q6ZMI3 (all domains)
Gene: GLDN

Molecule: Gliomedin

3D Structure

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Related Domains

Browse other domains in OLF →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group6-bladed(5.1.3)

FFamilyOLF(5.1.3.9)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Calcium ionCA
metal
Sodium ion

Pfam Families

Olfactomedin-like domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5YBY RCSB PDB: 5YBY PDBe: 5YBY UniProt: Q6ZMI3

Downloads

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metal

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4
DrugBank DB14523
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.