ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6hriA1 - ECOD Domain | ECOD

ECOD/Domains/e6hriA1

e6hriA1

UID: 002393534

PDB

Range: A:6-207
PDB: 6HRI chain A(all domains)
UniProt: O31815 (all domains)
Gene: yndL

Molecule: YndL

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gamma_PGA_hydro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyGamma_PGA_hydro(2011.1.1.13)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 3 additives (Imidazole, Sulfate ion, Citrate anion)

ImidazoleIMD
DrugBank DB03366
Sulfate ion

Pfam Families

PF05908Gamma_PGA_hydro

Poly-gamma-glutamate hydrolase

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 6HRI RCSB PDB: 6HRI PDBe: 6HRI UniProt: O31815

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.