ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6gedA1 - ECOD Domain | ECOD

ECOD/Domains/e6gedA1

e6gedA1

UID: 002394558

PDB

Range: A:260-554
PDB: 6GED chain A(all domains)
UniProt: Q04112 (all domains)
Gene: prgB

Molecule: PrgB

3D Structure

Loading viewer...

Related Domains

Browse other domains in GbpC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupGlycosyl hydrolase domain-like(12)

HH-groupV-region of surface antigen I/II (SA I/II, PAC)(12.4)

TT-groupV-region of surface antigen I/II (SA I/II, PAC)(12.4.1)

FFamilyGbpC(12.4.1.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Glucan-binding protein C

External Links

ECOD PDB View: 6GED RCSB PDB: 6GED PDBe: 6GED UniProt: Q04112

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure