ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6avtC4 - ECOD Domain | ECOD

ECOD/Domains/e6avtC4

e6avtC4

UID: 002395510

PDB

Range: C:-1-239
PDB: 6AVT chain C(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

Stavudine triphosphateD4T
drugDrugBank DB02887
Magnesium ionMG
metal

+ 1 additive (Glycerol)

GlycerolGOL

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 6AVT RCSB PDB: 6AVT PDBe: 6AVT UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.