ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b4cB1 - ECOD Domain | ECOD

ECOD/Domains/e6b4cB1

e6b4cB1

UID: 002395746

PDB

Range: B:17-294
PDB: 6B4C chain B(all domains)
UniProt: G9MQB8 (all domains)
Gene: TRIVIDRAFT_58105

Molecule: Viperin

3D Structure

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Related Domains

Browse other domains in Radical_SAM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM(2002.1.1.120)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Citrate anion)

Sulfate ionSO4
DrugBank DB14546
Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6B4C RCSB PDB: 6B4C PDBe: 6B4C UniProt: G9MQB8

Downloads

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