ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b8oC1 - ECOD Domain | ECOD

ECOD/Domains/e6b8oC1

e6b8oC1

UID: 002395940

PDB

Range: C:21-130
PDB: 6B8O chain C(all domains)
UniProt: Q9NZC2 (all domains)
Gene: TREM2

Molecule: Triggering receptor expressed on myeloid cells 2

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Iodide ionIOD
1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINEPSF

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 6B8O RCSB PDB: 6B8O PDBe: 6B8O UniProt: Q9NZC2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.