ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bedB2 - ECOD Domain | ECOD

ECOD/Domains/e6bedB2

e6bedB2

UID: 002396142

PDB

Range: B:-1-224
PDB: 6BED chain B(all domains)
UniProt: P68440 (all domains)
Gene: OPG125

Molecule: Scaffold protein D13

3D Structure

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Related Domains

Browse other domains in Pox_Rif →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPox_Rif(10.2.1.33)

Ligands

in contact, ≤ 4 Å

RifampinRFP
drugDrugBank DB01045

+ 2 additives (Formic acid, 1,2-ETHANEDIOL)

Formic acidFMT
DrugBank DB01942

Pfam Families

PF03340Pox_Rif

Poxvirus rifampicin resistance protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6BED RCSB PDB: 6BED PDBe: 6BED UniProt: P68440

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.