ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c0jB2 - ECOD Domain | ECOD

ECOD/Domains/e6c0jB2

e6c0jB2

UID: 002396558

PDB

Range: B:4-241
PDB: 6C0J chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Reverse transcriptase p51 subunit

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

4-[(4-{[4-(4-cyano-2,6-dimethylphenoxy)thieno[3,2-d]pyrimidin-2-yl]amino}piperidin-1-yl)methyl]benzene-1-sulfonamideK5A

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 6C0J RCSB PDB: 6C0J PDBe: 6C0J UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.