ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6c0oA3 - ECOD Domain | ECOD

ECOD/Domains/e6c0oA3

e6c0oA3

UID: 002396584

PDB

Range: A:429-554
PDB: 6C0O chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Reverse transcriptase/ribonuclease H

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNase_H →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H(2484.1.1.4)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

PF00075RNase_H

RNase H

ClanCL0219RNase_H

External Links

ECOD PDB View: 6C0O RCSB PDB: 6C0O PDBe: 6C0O UniProt: P03366

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.