ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c0pB1 - ECOD Domain | ECOD

ECOD/Domains/e6c0pB1

e6c0pB1

UID: 002396593

PDB

Range: B:231-304
PDB: 6C0P chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Reverse transcriptase p51 subunit

3D Structure

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Related Domains

Browse other domains in RVT_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRVT_thumb(4967.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06817RVT_thumb

Reverse transcriptase thumb domain

External Links

ECOD PDB View: 6C0P RCSB PDB: 6C0P PDBe: 6C0P UniProt: P03366

Downloads

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