ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ccvC1 - ECOD Domain | ECOD

ECOD/Domains/e6ccvC1

e6ccvC1

UID: 002396905

PDB

Range: C:21-172,C:368-493
PDB: 6CCV chain C(all domains)
UniProt: P60281 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010)

HH-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1)

TT-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1.1)

FFamilyRNA_pol_Rpb2_1,RNA_pol_Rpb2_3(4010.1.1.2)

Ligands

in contact, ≤ 4 Å

RifampinRFP
drugDrugBank DB01045

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF04563RNA_pol_Rpb2_1

RNA polymerase beta subunit

PF04565RNA_pol_Rpb2_3

RNA polymerase Rpb2, domain 3

External Links

ECOD PDB View: 6CCV RCSB PDB: 6CCV PDBe: 6CCV UniProt: P60281

Downloads

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1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.