ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d5gB1 - ECOD Domain | ECOD

ECOD/Domains/e6d5gB1

e6d5gB1

UID: 002397850

PDB

Range: B:565-1046
PDB: 6D5G chain B(all domains)
UniProt: Q07889 (all domains)
Gene: SOS1

Molecule: Son of sevenless homolog 1

3D Structure

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Related Domains

Browse other domains in RasGEF,RasGEF_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupRas GEF(109.6)

TT-groupRas GEF(109.6.1)

FFamilyRasGEF,RasGEF_N(109.6.1.2)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
Chloride ionCL
6-chloro-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-2-(piperazin-1-yl)-4-(1,2,3,6-tetrahydropyridin-4-yl)-1H-benzimidazoleFVD

Pfam Families

RasGEF domain

PF00618RasGEF_N

RasGEF N-terminal motif

ClanCL0542RAS_GEF_N

External Links

ECOD PDB View: 6D5G RCSB PDB: 6D5G PDBe: 6D5G UniProt: Q07889

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Formic acid, Glycerin)

Formic acidFMT
DrugBank DB01942
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.