ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d88A1 - ECOD Domain | ECOD

ECOD/Domains/e6d88A1

e6d88A1

UID: 002398055

PDB

Range: A:1-244
PDB: 6D88 chain A(all domains)
UniProt: Q2XVP4 (all domains)
Gene: TUBA1B

Molecule: Tubulin alpha-1B chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Calcium ionCA
metal
[2-(1H-indol-3-yl)-1H-imidazol-4-yl](8-methoxy-1,4-benzodioxin-6-yl)methanone

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6D88 RCSB PDB: 6D88 PDBe: 6D88 UniProt: Q2XVP4

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.