ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dm0B1 - ECOD Domain | ECOD

ECOD/Domains/e6dm0B1

e6dm0B1

UID: 002398816

PDB

Range: B:512-543,B:567-998
PDB: 6DM0 chain B(all domains)
UniProt: P19491 (all domains)
Gene: Gria2

Molecule: Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit

3D Structure

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Related Domains

Browse other domains in Lig_chan →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyLig_chan(5054.1.1.1)

Ligands

in contact, ≤ 4 Å

CyclothiazideCYZ
drugDrugBank DB00606
Glutamic acidGLU
drugDrugBank DB00142
N,N,N-trimethyl-5-({[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]decan-1-yl]methyl}amino)pentan-1-aminium

Pfam Families

PF00060Lig_chan

Ligand-gated ion channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 6DM0 RCSB PDB: 6DM0 PDBe: 6DM0 UniProt: P19491

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.