ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6duhA4 - ECOD Domain | ECOD

ECOD/Domains/e6duhA4

e6duhA4

UID: 002399205

PDB

Range: A:317-428
PDB: 6DUH chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: p66 RT

3D Structure

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Related Domains

Browse other domains in RVT_connect →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRVT_connect(2484.5.1.1)

Ligands

in contact, ≤ 4 Å

4-({4-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}thieno[3,2-d]pyrimidin-2-yl)amino]piperidin-1-yl}methyl)benzene-1-sulfonamideK5C

+ 3 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL, Sulfate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

PF06815RVT_connect

Reverse transcriptase connection domain

External Links

ECOD PDB View: 6DUH RCSB PDB: 6DUH PDBe: 6DUH UniProt: P03366

Downloads

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1,2-ETHANEDIOL

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.