ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6e48B1 - ECOD Domain | ECOD

ECOD/Domains/e6e48B1

e6e48B1

UID: 002399893

PDB

Range: B:229-530
PDB: 6E48 chain B(all domains)
UniProt: Q80J94 (all domains)
Gene: ORF2

Molecule: VP1 P domain

3D Structure

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Related Domains

Browse other domains in Calici_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalici_coat_C(10.2.1.43)

Ligands

in contact, ≤ 4 Å

(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid4OA
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6E48 RCSB PDB: 6E48 PDBe: 6E48 UniProt: Q80J94

Downloads

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