ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6emuB1 - ECOD Domain | ECOD

ECOD/Domains/e6emuB1

e6emuB1

UID: 002400357

PDB

Range: B:98-272
PDB: 6EMU chain B(all domains)
UniProt: Q5JD38 (all domains)
Gene: TK0422

Molecule: tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase

3D Structure

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Related Domains

Browse other domains in TRM10_TRM10A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTRM10_TRM10A(2488.1.1.19)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF27710TRM10_TRM10A

tRNA (guanine(9)-N(1))-methyltransferase TRM10/TRM10A

ClanCL0098SPOUT

External Links

ECOD PDB View: 6EMU RCSB PDB: 6EMU PDBe: 6EMU UniProt: Q5JD38

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.