ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gfkB1 - ECOD Domain | ECOD

ECOD/Domains/e6gfkB1

e6gfkB1

UID: 002402295

PDB

Range: B:43-188,B:214-291
PDB: 6GFK chain B(all domains)
UniProt: Q86W50 (all domains)
Gene: METTL16

Molecule: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_10 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_10(2003.1.5.54)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF05971Methyltransf_10

RNA methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6GFK RCSB PDB: 6GFK PDBe: 6GFK UniProt: Q86W50

Downloads

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Drug annotations from DrugDomain.