ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6gxwA1 - ECOD Domain | ECOD

ECOD/Domains/e6gxwA1

e6gxwA1

UID: 002403507

PDB

Range: A:2-435
PDB: 6GXW chain A(all domains)
UniProt: A5H660 (all domains)
Gene: HDAC8

Molecule: Histone deacetylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

(~{E})-3-[2-[[2,6-bis(chloranyl)phenyl]methoxy]phenyl]-~{N}-oxidanyl-prop-2-enamideFGN
Potassium ionK
metal
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 6GXW RCSB PDB: 6GXW PDBe: 6GXW UniProt: A5H660

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (N,N-dimethylformamide, Glycerin)

N,N-dimethylformamideDMF
DrugBank DB01844
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.