ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hrjA1 - ECOD Domain | ECOD

ECOD/Domains/e6hrjA1

e6hrjA1

UID: 002404144

PDB

Range: A:6-207
PDB: 6HRJ chain A(all domains)
UniProt: O31815 (all domains)
Gene: yndL

Molecule: YndL

3D Structure

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Related Domains

Browse other domains in Gamma_PGA_hydro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyGamma_PGA_hydro(2011.1.1.13)

Ligands

in contact, ≤ 4 Å

Benzyl alcohol010
drugDrugBank DB06770
fluoroacetic acidFAH

+ 2 additives (Sulfate ion, Citrate anion)

Sulfate ion

Pfam Families

PF05908Gamma_PGA_hydro

Poly-gamma-glutamate hydrolase

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 6HRJ RCSB PDB: 6HRJ PDBe: 6HRJ UniProt: O31815

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.